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© Arne Elofsson

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Prediction in text file can be found in query.result.txt

The sequence file in FASTA format can be found in seq.fa


Predicted topologies and predicted ΔG values:

Topology
High-resolution image


Consensus prediction (TOPCONS):

Consensus
High-resolution image

Predicted signal peptide and TM-helix positions (position starting from 1):

TOPCONS  TM1: 46-66
OCTOPUS  TM1: 46-66
Philius  TM1: 46-69
PolyPhobius  TM1: 46-68
SCAMPI  TM1: 46-66
SPOCTOPUS  TM1: 46-66
PDB-homology  ***No homologous TM proteins detected***

Sequence and predicted topologies: (i: inside the membrane, o: outside of the membrane, M: membrane region, u: non-membrane region but location unkown)

 1                                           41         
Seq.   MKPHTSEPDM IQGGSGQDGA AAMARYEKRQ QARVLSKEKR KKQYRFIGWL
TOPCONS   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiMMMMM
OCTOPUS   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiMMMMM
PHILIUS   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiMMMMM
PolyPhobius   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiMMMMM
SCAMPI   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiMMMMM
SPOCTOPUS   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiMMMMM
 
 51                                          91         
Seq.   LFAFAVLWGM GALIWSGYGA LKTTAGREIA IMRLKGAIED RNAAALQVML
TOPCONS   MMMMMMMMMM MMMMMMoooo oooooooooo oooooooooo oooooooooo
OCTOPUS   MMMMMMMMMM MMMMMMoooo oooooooooo oooooooooo oooooooooo
PHILIUS   MMMMMMMMMM MMMMMMMMMo oooooooooo oooooooooo oooooooooo
PolyPhobius   MMMMMMMMMM MMMMMMMMoo oooooooooo oooooooooo oooooooooo
SCAMPI   MMMMMMMMMM MMMMMMoooo oooooooooo oooooooooo oooooooooo
SPOCTOPUS   MMMMMMMMMM MMMMMMoooo oooooooooo oooooooooo oooooooooo
 
 101                                         141        
Seq.   RVTDETVPLN DQTLTPLFAY FDQHPEAYKM LDEEFARQSE GKQVYIKGLT
TOPCONS   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
OCTOPUS   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
PHILIUS   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
PolyPhobius   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
SCAMPI   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
SPOCTOPUS   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
 
 151                                         191        
Seq.   SHPPVFTIHV FENRYVFEPA LYFIHARVAD SEATLVVNGV KVKEEETKDP
TOPCONS   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
OCTOPUS   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
PHILIUS   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
PolyPhobius   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
SCAMPI   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
SPOCTOPUS   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
 
 201                                         241        
Seq.   FVKKIGPYLP GAYTVTAVHP DGKKKTARVE LFGGARVREV DITK
TOPCONS   oooooooooo oooooooooo oooooooooo oooooooooo oooo
OCTOPUS   oooooooooo oooooooooo oooooooooo oooooooooo oooo
PHILIUS   oooooooooo oooooooooo oooooooooo oooooooooo oooo
PolyPhobius   oooooooooo oooooooooo oooooooooo oooooooooo oooo
SCAMPI   oooooooooo oooooooooo oooooooooo oooooooooo oooo
SPOCTOPUS   oooooooooo oooooooooo oooooooooo oooooooooo oooo