|
Prediction in text file can be found in
query.result.txt
The sequence file in FASTA format can be found in
seq.fa
Predicted topologies and predicted ΔG values:
Consensus prediction (TOPCONS):
Predicted signal peptide and TM-helix positions (position starting from 1):
| TOPCONS |
TM1: 18-38, |
TM2: 49-69, |
TM3: 77-97, |
TM4: 99-119 |
| OCTOPUS |
TM1: 18-38, |
TM2: 50-70, |
TM3: 81-95, |
TM4: 97-111 |
| Philius |
TM1: 20-40, |
TM2: 48-69, |
TM3: 78-110 |
| PolyPhobius |
TM1: 20-38, |
TM2: 49-71, |
TM3: 77-96, |
TM4: 98-119 |
| SCAMPI |
TM1: 20-40, |
TM2: 49-69, |
TM3: 75-95, |
TM4: 99-119 |
| SPOCTOPUS |
TM1: 18-38, |
TM2: 50-70, |
TM3: 81-95, |
TM4: 97-111 |
| PDB-homology |
***No homologous TM proteins detected*** |
Sequence and predicted topologies:
(i: inside the membrane, o: outside of the membrane, M: membrane region, u: non-membrane region but location unkown)
| | 1 41 | | Seq. | MDKLSMEEIL RKILIEKYKY TVVIAVSYYI LPFLIYLIPV DDPFDRMTLF |
| TOPCONS | iiiiiiiiii iiiiiiiMMM MMMMMMMMMM MMMMMMMMoo ooooooooMM |
| OCTOPUS | iiiiiiiiii iiiiiiiMMM MMMMMMMMMM MMMMMMMMoo oooooooooM |
| PHILIUS | iiiiiiiiii iiiiiiiiiM MMMMMMMMMM MMMMMMMMMM oooooooMMM |
| PolyPhobius | iiiiiiiiii iiiiiiiiiM MMMMMMMMMM MMMMMMMMoo ooooooooMM |
| SCAMPI | iiiiiiiiii iiiiiiiiiM MMMMMMMMMM MMMMMMMMMM ooooooooMM |
| SPOCTOPUS | iiiiiiiiii iiiiiiiMMM MMMMMMMMMM MMMMMMMMoo oooooooooM |
| |
| | 51 91 | | Seq. | ALAVIAVIPF ILLVLSIIFA MDNGFHWYFS FRVFILCLAY MIFTGASVFI |
| TOPCONS | MMMMMMMMMM MMMMMMMMMi iiiiiiMMMM MMMMMMMMMM MMMMMMMoMM |
| OCTOPUS | MMMMMMMMMM MMMMMMMMMM iiiiiiiiii MMMMMMMMMM MMMMMoMMMM |
| PHILIUS | MMMMMMMMMM MMMMMMMMMi iiiiiiiMMM MMMMMMMMMM MMMMMMMMMM |
| PolyPhobius | MMMMMMMMMM MMMMMMMMMM MiiiiiMMMM MMMMMMMMMM MMMMMMoMMM |
| SCAMPI | MMMMMMMMMM MMMMMMMMMi iiiiMMMMMM MMMMMMMMMM MMMMMoooMM |
| SPOCTOPUS | MMMMMMMMMM MMMMMMMMMM iiiiiiiiii MMMMMMMMMM MMMMMoMMMM |
| |
| | 101 121 | | Seq. | YCGILFIVSL TGQSIGAFIR THKW |
| TOPCONS | MMMMMMMMMM MMMMMMMMMi iiii |
| OCTOPUS | MMMMMMMMMM Miiiiiiiii iiii |
| PHILIUS | MMMMMMMMMM oooooooooo oooo |
| PolyPhobius | MMMMMMMMMM MMMMMMMMMi iiii |
| SCAMPI | MMMMMMMMMM MMMMMMMMMi iiii |
| SPOCTOPUS | MMMMMMMMMM Miiiiiiiii iiii |
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