|
Prediction in text file can be found in
query.result.txt
The sequence file in FASTA format can be found in
seq.fa
Predicted topologies and predicted ΔG values:
Consensus prediction (TOPCONS):
Predicted signal peptide and TM-helix positions (position starting from 1):
| TOPCONS |
TM1: 14-34, |
TM2: 44-64, |
TM3: 72-92, |
TM4: 94-114 |
| OCTOPUS |
TM1: 14-34, |
TM2: 44-64, |
TM3: 76-90, |
TM4: 92-106 |
| Philius |
TM1: 15-35, |
TM2: 43-65, |
TM3: 73-107 |
| PolyPhobius |
TM1: 13-33, |
TM2: 44-65, |
TM3: 72-89, |
TM4: 93-114 |
| SCAMPI |
TM1: 13-33, |
TM2: 44-64, |
TM3: 72-92, |
TM4: 94-114 |
| SPOCTOPUS |
TM1: 14-34, |
TM2: 44-64, |
TM3: 76-90, |
TM4: 92-106 |
| PDB-homology |
***No homologous TM proteins detected*** |
Sequence and predicted topologies:
(i: inside the membrane, o: outside of the membrane, M: membrane region, u: non-membrane region but location unkown)
| | 1 41 | | Seq. | MEEILKKVFI EKYKYSIVIA ISYYILPFSV YIVPVEDPFD RAILFAYIVI |
| TOPCONS | iiiiiiiiii iiiMMMMMMM MMMMMMMMMM MMMMoooooo oooMMMMMMM |
| OCTOPUS | iiiiiiiiii iiiMMMMMMM MMMMMMMMMM MMMMoooooo oooMMMMMMM |
| PHILIUS | iiiiiiiiii iiiiMMMMMM MMMMMMMMMM MMMMMooooo ooMMMMMMMM |
| PolyPhobius | iiiiiiiiii iiMMMMMMMM MMMMMMMMMM MMMooooooo oooMMMMMMM |
| SCAMPI | iiiiiiiiii iiMMMMMMMM MMMMMMMMMM MMMooooooo oooMMMMMMM |
| SPOCTOPUS | iiiiiiiiii iiiMMMMMMM MMMMMMMMMM MMMMoooooo oooMMMMMMM |
| |
| | 51 91 | | Seq. | AVIPLILLVL SIIFAIRNGF YWYFSFRIFI LCLAYMLFTG ISILMFCVGY |
| TOPCONS | MMMMMMMMMM MMMMiiiiii iMMMMMMMMM MMMMMMMMMM MMoMMMMMMM |
| OCTOPUS | MMMMMMMMMM MMMMiiiiii iiiiiMMMMM MMMMMMMMMM oMMMMMMMMM |
| PHILIUS | MMMMMMMMMM MMMMMiiiii iiMMMMMMMM MMMMMMMMMM MMMMMMMMMM |
| PolyPhobius | MMMMMMMMMM MMMMMiiiii iMMMMMMMMM MMMMMMMMMo ooMMMMMMMM |
| SCAMPI | MMMMMMMMMM MMMMiiiiii iMMMMMMMMM MMMMMMMMMM MMoMMMMMMM |
| SPOCTOPUS | MMMMMMMMMM MMMMiiiiii iiiiiMMMMM MMMMMMMMMM oMMMMMMMMM |
| |
| | 101 111 | | Seq. | FIVSVIGQCI GAFIRDHKL |
| TOPCONS | MMMMMMMMMM MMMMiiiii |
| OCTOPUS | MMMMMMiiii iiiiiiiii |
| PHILIUS | MMMMMMMooo ooooooooo |
| PolyPhobius | MMMMMMMMMM MMMMiiiii |
| SCAMPI | MMMMMMMMMM MMMMiiiii |
| SPOCTOPUS | MMMMMMiiii iiiiiiiii |
|
|
